species:   Scscl
pid:       PID1578
parent:    Ssc-milR-54
paralog:   
locus:     NW_001820815.1:677906-678000
matures:   ['GCAGGGUUUACAUGAUUGCCUUC', 'UUGUAAUUGUGGUCAUCCUCGUCC']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NW_001820815.1:677906-678000

0 out of bounds
1 alignments
1 proper strand
1 stranded perfect matches

                        ************************          ****************                     
GGGGGCUAGGGCAGGGUUUACAUGAUUGCCUUCGCAGGGGGGGUUCGGGCCGGUAGGCCUUUUGGGGUUGUAAUUGUGGUCAUCCUCGUCCACUA
........(((((((((...(((((((((..((.((((........(((((....))))))))).))..)))))))))...))))).))))....
----------GCAGGGUUUACAUGAUUGCCUUC-------------------------------------------------------------- l=23 a=0 c
-------------------------------------------------------------------UUGUAAUUGUGGUCAUCCUCGUCC---- l=24 a=0 c*
--------------------------UGCCUUCGCAGGGGGGGUUCGG----------------------------------------------- l=22 a=1 ma
------------------------------------------------------------UUUGGGGUUGUAAU--------------------- l=14 a=0 ma*

--------------------------UGCCUUCGCAGGGGGGGUUCGG----------------------------------------------- l=22 a=1 (ma)

mb-00010
ax-1001111
ku-01
ss-110111101010
fn-011
